HCSGD entry for USP38
1. General information
| Official gene symbol | USP38 |
|---|---|
| Entrez ID | 84640 |
| Gene full name | ubiquitin specific peptidase 38 |
| Other gene symbols | HP43.8KD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004221 | Ubiquitin thiolesterase activity | IEA | molecular_function |
| GO:0006511 | Ubiquitin-dependent protein catabolic process | IEA | biological_process |
| GO:0008234 | Cysteine-type peptidase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1663972759 | 0.2666602219 | 0.8058584913 | 0.9888368132 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2468239119 |
| GSE13712_SHEAR | Up | 0.0553838967 |
| GSE13712_STATIC | Down | -0.0902675184 |
| GSE19018 | Down | -0.6960084471 |
| GSE19899_A1 | Up | 0.2012782186 |
| GSE19899_A2 | Up | 0.3428352090 |
| PubMed_21979375_A1 | Up | 0.4904578463 |
| PubMed_21979375_A2 | Up | 0.9110165733 |
| GSE35957 | Up | 0.3849130411 |
| GSE36640 | Up | 0.3167069221 |
| GSE54402 | Up | 0.3037657578 |
| GSE9593 | Down | -0.1502093343 |
| GSE43922 | Up | 0.3358245217 |
| GSE24585 | Down | -0.0373670800 |
| GSE37065 | Up | 0.0690531469 |
| GSE28863_A1 | Down | -0.0675819362 |
| GSE28863_A2 | Down | -0.2990379135 |
| GSE28863_A3 | Down | -0.4621221801 |
| GSE28863_A4 | Down | -0.5523768485 |
| GSE48662 | Down | -0.3216958031 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT023119 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT048041 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050808 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
