HCSGD entry for ZBED3
1. General information
| Official gene symbol | ZBED3 |
|---|---|
| Entrez ID | 84327 |
| Gene full name | zinc finger, BED-type containing 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001933 | Negative regulation of protein phosphorylation | IEA ISS | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005829 | Cytosol | IEA ISS | cellular_component |
| GO:0016020 | Membrane | IEA ISS | cellular_component |
| GO:0016055 | Wnt signaling pathway | IEA | biological_process |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA ISS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0050821 | Protein stabilization | IEA ISS | biological_process |
| GO:0090263 | Positive regulation of canonical Wnt signaling pathway | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9840337981 | 0.0087911895 | 0.9999902473 | 0.1864568090 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2059681026 |
| GSE13712_SHEAR | Down | -1.5801931087 |
| GSE13712_STATIC | Down | -0.8060248322 |
| GSE19018 | Down | -0.0302727817 |
| GSE19899_A1 | Down | -0.2048246034 |
| GSE19899_A2 | Down | -0.7195022510 |
| PubMed_21979375_A1 | Down | -0.1126212828 |
| PubMed_21979375_A2 | Down | -0.4536052349 |
| GSE35957 | Down | -0.9337308883 |
| GSE36640 | Down | -0.4072150662 |
| GSE54402 | Down | -0.6072613384 |
| GSE9593 | Down | -1.3832622321 |
| GSE43922 | Up | 0.0512028747 |
| GSE24585 | Up | 0.1258345430 |
| GSE37065 | Down | -0.2390580337 |
| GSE28863_A1 | Down | -0.0025111713 |
| GSE28863_A2 | Up | 0.2142369852 |
| GSE28863_A3 | Up | 0.0425818492 |
| GSE28863_A4 | Up | 0.1979215957 |
| GSE48662 | Down | -0.4265622900 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002674 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT002674 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021400 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021400 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050888 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
