HCSGD entry for VPS25
1. General information
| Official gene symbol | VPS25 |
|---|---|
| Entrez ID | 84313 |
| Gene full name | vacuolar protein sorting 25 homolog (S. cerevisiae) |
| Other gene symbols | DERP9 EAP20 FAP20 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005654 | Nucleoplasm | IEA | cellular_component |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9843747996 | 0.0360945861 | 0.9999902473 | 0.3581466717 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0804639767 |
| GSE13712_SHEAR | Down | -0.4777461188 |
| GSE13712_STATIC | Down | -0.0180335212 |
| GSE19018 | Up | 0.0639986661 |
| GSE19899_A1 | Down | -0.5869947634 |
| GSE19899_A2 | Down | -0.3834391760 |
| PubMed_21979375_A1 | Down | -0.0503248303 |
| PubMed_21979375_A2 | Down | -0.3093882243 |
| GSE35957 | Down | -0.0803452913 |
| GSE36640 | Down | -0.3651780251 |
| GSE54402 | Down | -0.2151409265 |
| GSE9593 | Down | -0.2342055763 |
| GSE43922 | Down | -0.3122331461 |
| GSE24585 | Down | -0.0825700047 |
| GSE37065 | Down | -0.3893126812 |
| GSE28863_A1 | Up | 0.0153154531 |
| GSE28863_A2 | Down | -0.0778273439 |
| GSE28863_A3 | Down | -0.3548557301 |
| GSE28863_A4 | Up | 0.0407976049 |
| GSE48662 | Down | -0.2804735902 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-24-3p | MIMAT0000080 | MIRT030413 | Microarray | Functional MTI (Weak) | 19748357 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
