HCSGD entry for C9orf89
1. General information
| Official gene symbol | C9orf89 |
|---|---|
| Entrez ID | 84270 |
| Gene full name | chromosome 9 open reading frame 89 |
| Other gene symbols | BinCARD bA370F5.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | NAS | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005829 | Cytosol | NAS | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0031966 | Mitochondrial membrane | IEA | cellular_component |
| GO:0043124 | Negative regulation of I-kappaB kinase/NF-kappaB signaling | NAS | biological_process |
| GO:0050700 | CARD domain binding | NAS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1324072490 | 0.9470797766 | 0.7377187658 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2225505020 |
| GSE13712_SHEAR | Down | -0.0877381752 |
| GSE13712_STATIC | Down | -0.0414320872 |
| GSE19018 | Up | 0.3087940117 |
| GSE19899_A1 | Up | 0.3083083780 |
| GSE19899_A2 | Up | 0.3749084152 |
| PubMed_21979375_A1 | Up | 1.0914696704 |
| PubMed_21979375_A2 | Down | -0.0040593709 |
| GSE35957 | Down | -0.1867668989 |
| GSE36640 | Up | 0.2669699346 |
| GSE54402 | Up | 0.4059726962 |
| GSE9593 | Up | 0.0719614586 |
| GSE43922 | Up | 0.2772186047 |
| GSE24585 | Down | -0.1025457013 |
| GSE37065 | Up | 0.0316446421 |
| GSE28863_A1 | Down | -0.1040422141 |
| GSE28863_A2 | Down | -0.1179329547 |
| GSE28863_A3 | Up | 0.0616173995 |
| GSE28863_A4 | Up | 0.0487963327 |
| GSE48662 | Down | -0.1563419783 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT005261 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021375 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040130 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
