HCSGD entry for USP48
1. General information
| Official gene symbol | USP48 |
|---|---|
| Entrez ID | 84196 |
| Gene full name | ubiquitin specific peptidase 48 |
| Other gene symbols | RAP1GA1 USP31 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004221 | Ubiquitin thiolesterase activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006511 | Ubiquitin-dependent protein catabolic process | IEA | biological_process |
| GO:0008234 | Cysteine-type peptidase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3970565594 | 0.5074110330 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0222713224 |
| GSE13712_SHEAR | Up | 0.1785896501 |
| GSE13712_STATIC | Up | 0.0472471687 |
| GSE19018 | Up | 0.1476812607 |
| GSE19899_A1 | Down | -0.0099633231 |
| GSE19899_A2 | Up | 0.1397389702 |
| PubMed_21979375_A1 | Down | -0.4999558618 |
| PubMed_21979375_A2 | Up | 0.0262667443 |
| GSE35957 | Down | -0.2727387254 |
| GSE36640 | Down | -0.3390676952 |
| GSE54402 | Down | -0.1888419912 |
| GSE9593 | Down | -0.1929508731 |
| GSE43922 | Up | 0.0093869441 |
| GSE24585 | Up | 0.2163867301 |
| GSE37065 | Down | -0.3078184753 |
| GSE28863_A1 | Up | 0.9289334964 |
| GSE28863_A2 | Up | 0.7473477104 |
| GSE28863_A3 | Up | 0.1534269532 |
| GSE28863_A4 | Down | -0.0464723477 |
| GSE48662 | Down | -0.1640495100 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002595 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019401 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
