HCSGD entry for USP42
1. General information
| Official gene symbol | USP42 |
|---|---|
| Entrez ID | 84132 |
| Gene full name | ubiquitin specific peptidase 42 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004221 | Ubiquitin thiolesterase activity | IEA | molecular_function |
| GO:0004843 | Ubiquitin-specific protease activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006511 | Ubiquitin-dependent protein catabolic process | IEA | biological_process |
| GO:0007283 | Spermatogenesis | IEA | biological_process |
| GO:0016579 | Protein deubiquitination | IEA ISS | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7618163406 | 0.5260294822 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0279373657 |
| GSE13712_SHEAR | Up | 0.1611232629 |
| GSE13712_STATIC | Up | 0.0427551746 |
| GSE19018 | Down | -0.1038662105 |
| GSE19899_A1 | Down | -0.0065260189 |
| GSE19899_A2 | Up | 0.0959329604 |
| PubMed_21979375_A1 | Up | 0.0518212386 |
| PubMed_21979375_A2 | Down | -0.1338837473 |
| GSE35957 | Down | -0.1609830404 |
| GSE36640 | Down | -0.3039018769 |
| GSE54402 | Up | 0.1772442414 |
| GSE9593 | Down | -0.1237147085 |
| GSE43922 | Up | 0.0495198300 |
| GSE24585 | Down | -0.0548484475 |
| GSE37065 | Up | 0.2002852673 |
| GSE28863_A1 | Up | 0.0394929399 |
| GSE28863_A2 | Up | 0.3311515862 |
| GSE28863_A3 | Down | -0.1526021582 |
| GSE28863_A4 | Down | -0.3478524751 |
| GSE48662 | Up | 0.1489672269 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027058 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031569 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-320a | MIMAT0000510 | MIRT044815 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
