HCSGD entry for STK40
1. General information
| Official gene symbol | STK40 |
|---|---|
| Entrez ID | 83931 |
| Gene full name | serine/threonine kinase 40 |
| Other gene symbols | RP11-268J15.4 SHIK SgK495 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004674 | Protein serine/threonine kinase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2339286273 | 0.8131084419 | 0.9176338037 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0039863898 |
| GSE13712_SHEAR | Up | 0.0394176808 |
| GSE13712_STATIC | Down | -0.2779303970 |
| GSE19018 | Down | -0.0686432149 |
| GSE19899_A1 | Down | -0.0511137257 |
| GSE19899_A2 | Up | 0.6289299373 |
| PubMed_21979375_A1 | Up | 0.6656872250 |
| PubMed_21979375_A2 | Up | 0.7426796071 |
| GSE35957 | Down | -0.0482215911 |
| GSE36640 | Up | 0.3540023885 |
| GSE54402 | Down | -0.0095925736 |
| GSE9593 | Up | 0.2037530714 |
| GSE43922 | Up | 0.1101004516 |
| GSE24585 | Down | -0.1412569646 |
| GSE37065 | Down | -0.0290575548 |
| GSE28863_A1 | Up | 0.0022257202 |
| GSE28863_A2 | Up | 0.1436920374 |
| GSE28863_A3 | Down | -0.3016835552 |
| GSE28863_A4 | Down | -0.0799056790 |
| GSE48662 | Up | 0.1478354735 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-31-5p | MIMAT0000089 | MIRT007319 | Luciferase reporter assay | Functional MTI | 23233723 |
| hsa-miR-31-5p | MIMAT0000089 | MIRT007319 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025713 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026054 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027005 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7d-5p | MIMAT0000065 | MIRT032155 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-940 | MIMAT0004983 | MIRT036586 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039827 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106b-5p | MIMAT0000680 | MIRT044350 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047110 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
