HCSGD entry for RBM4B
1. General information
| Official gene symbol | RBM4B |
|---|---|
| Entrez ID | 83759 |
| Gene full name | RNA binding motif protein 4B |
| Other gene symbols | RBM30 RBM4L ZCCHC15 ZCCHC21B ZCRB3B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0006417 | Regulation of translation | ISS | biological_process |
| GO:0007623 | Circadian rhythm | ISS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0010628 | Positive regulation of gene expression | IEA | biological_process |
| GO:0032922 | Circadian regulation of gene expression | ISS | biological_process |
| GO:0043153 | Entrainment of circadian clock by photoperiod | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9518350443 | 0.0346959158 | 0.9999902473 | 0.3527386898 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1496304918 |
| GSE13712_SHEAR | Down | -0.0437437933 |
| GSE13712_STATIC | Down | -0.1450601203 |
| GSE19018 | Down | -0.2199804417 |
| GSE19899_A1 | Down | -0.3228807195 |
| GSE19899_A2 | Down | -1.1598670499 |
| PubMed_21979375_A1 | Up | 0.0027799760 |
| PubMed_21979375_A2 | Down | -0.9317872282 |
| GSE35957 | Down | -0.8008084133 |
| GSE36640 | Down | -0.2808857282 |
| GSE54402 | Down | -0.0517049429 |
| GSE9593 | Up | 0.0272629685 |
| GSE43922 | Down | -0.0807291922 |
| GSE24585 | Up | 0.2151981913 |
| GSE37065 | Up | 0.1193170602 |
| GSE28863_A1 | Down | -0.1477200175 |
| GSE28863_A2 | Down | -0.0826358151 |
| GSE28863_A3 | Down | -0.3104778776 |
| GSE28863_A4 | Up | 0.0053735432 |
| GSE48662 | Up | 0.2201003202 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041260 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-424-5p | MIMAT0001341 | MIRT042450 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
