HCSGD entry for CHST9
1. General information
| Official gene symbol | CHST9 |
|---|---|
| Entrez ID | 83539 |
| Gene full name | carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 |
| Other gene symbols | GALNAC4ST-2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0001537 | N-acetylgalactosamine 4-O-sulfotransferase activity | IDA ISS | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006790 | Sulfur compound metabolic process | IDA | biological_process |
| GO:0016021 | Integral component of membrane | NAS | cellular_component |
| GO:0016051 | Carbohydrate biosynthetic process | IEA | biological_process |
| GO:0030166 | Proteoglycan biosynthetic process | ISS | biological_process |
| GO:0030203 | Glycosaminoglycan metabolic process | NAS TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | TAS | biological_process |
| GO:0042446 | Hormone biosynthetic process | ISS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1935409673 | 0.9334074085 | 0.8529046878 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0953724795 |
| GSE13712_SHEAR | Down | -0.0145255828 |
| GSE13712_STATIC | Down | -0.0444013147 |
| GSE19018 | Up | 0.0826380620 |
| GSE19899_A1 | Up | 0.1995541726 |
| GSE19899_A2 | Down | -0.1381919852 |
| PubMed_21979375_A1 | Up | 0.3081405408 |
| PubMed_21979375_A2 | Down | -0.0349864995 |
| GSE35957 | Up | 0.0701632699 |
| GSE36640 | Up | 0.0986874949 |
| GSE54402 | Up | 0.0230147233 |
| GSE9593 | Up | 0.0142523885 |
| GSE43922 | Up | 0.0120731812 |
| GSE24585 | Up | 1.7005896116 |
| GSE37065 | Up | 0.0286606822 |
| GSE28863_A1 | Up | 0.0151040786 |
| GSE28863_A2 | Down | -0.0483433711 |
| GSE28863_A3 | Up | 0.1724022704 |
| GSE28863_A4 | Down | -0.0139154409 |
| GSE48662 | Up | 0.0238625497 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018484 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT048939 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
