HCSGD entry for RAB33B
1. General information
| Official gene symbol | RAB33B |
|---|---|
| Entrez ID | 83452 |
| Gene full name | RAB33B, member RAS oncogene family |
| Other gene symbols | SMC2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005796 | Golgi lumen | IDA | cellular_component |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:2000156 | Regulation of retrograde vesicle-mediated transport, Golgi to ER | IMP | biological_process |
| GO:2000785 | Regulation of autophagic vacuole assembly | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0444950230 | 0.7806674063 | 0.4695884122 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1650695665 |
| GSE13712_SHEAR | Up | 0.6566777361 |
| GSE13712_STATIC | Up | 0.8143165755 |
| GSE19018 | Up | 0.6228738236 |
| GSE19899_A1 | Up | 0.2464293811 |
| GSE19899_A2 | Up | 0.3462682759 |
| PubMed_21979375_A1 | Up | 0.6513521490 |
| PubMed_21979375_A2 | Up | 0.4985542233 |
| GSE35957 | Down | -0.0710249877 |
| GSE36640 | Up | 0.5007859950 |
| GSE54402 | Down | -0.2374314081 |
| GSE9593 | Down | -0.1982062140 |
| GSE43922 | Up | 0.1488862812 |
| GSE24585 | Up | 0.2283064703 |
| GSE37065 | Down | -0.2015210711 |
| GSE28863_A1 | Down | -0.0898986907 |
| GSE28863_A2 | Up | 0.0454277964 |
| GSE28863_A3 | Down | -0.2607506673 |
| GSE28863_A4 | Down | -0.2239327413 |
| GSE48662 | Up | 0.0178379687 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-100-5p | MIMAT0000098 | MIRT048429 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
