HCSGD entry for RAB1B
1. General information
| Official gene symbol | RAB1B |
|---|---|
| Entrez ID | 81876 |
| Gene full name | RAB1B, member RAS oncogene family |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005525 | GTP binding | IDA IEA | molecular_function |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0385745184 | 0.1980800919 | 0.4441829834 | 0.8606249752 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2259892254 |
| GSE13712_SHEAR | Down | -0.0001401811 |
| GSE13712_STATIC | Down | -0.0988981103 |
| GSE19018 | Up | 0.2581419380 |
| GSE19899_A1 | Up | 0.2276341456 |
| GSE19899_A2 | Up | 0.7030738506 |
| PubMed_21979375_A1 | Up | 1.8117773201 |
| PubMed_21979375_A2 | Up | 1.7816083986 |
| GSE35957 | Up | 0.4154626643 |
| GSE36640 | Up | 0.1497619607 |
| GSE54402 | Up | 0.6847863794 |
| GSE9593 | Up | 0.1555920275 |
| GSE43922 | Up | 0.2350646309 |
| GSE24585 | Down | -0.2331063127 |
| GSE37065 | Down | -0.1411672987 |
| GSE28863_A1 | Down | -0.7253222653 |
| GSE28863_A2 | Down | -1.1530319898 |
| GSE28863_A3 | Down | -0.7200630218 |
| GSE28863_A4 | Down | -0.2029020215 |
| GSE48662 | Up | 0.0597944813 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-107 | MIMAT0000104 | MIRT004695 | Flow//Immunoblot//Microarray//qRT-PCR | Functional MTI (Weak) | 19688090 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020151 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025973 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027096 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031730 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031730 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037260 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-874-3p | MIMAT0004911 | MIRT037765 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043136 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-185-5p | MIMAT0000455 | MIRT045358 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046393 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-107 | MIMAT0000104 | NA | hsa-miR-107 | 19688090 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
