HCSGD entry for VANGL1
1. General information
| Official gene symbol | VANGL1 |
|---|---|
| Entrez ID | 81839 |
| Gene full name | VANGL planar cell polarity protein 1 |
| Other gene symbols | KITENIN LPP2 STB2 STBM2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9871678090 | 0.0073493446 | 0.9999902473 | 0.1713393268 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4490882746 |
| GSE13712_SHEAR | Down | -0.2815512944 |
| GSE13712_STATIC | Down | -0.0122856099 |
| GSE19018 | Down | -0.3070356475 |
| GSE19899_A1 | Down | -0.3305840836 |
| GSE19899_A2 | Down | -0.5590638345 |
| PubMed_21979375_A1 | Down | -1.3638703012 |
| PubMed_21979375_A2 | Down | -0.2930525993 |
| GSE35957 | Down | -0.3540744029 |
| GSE36640 | Down | -0.5060212339 |
| GSE54402 | Down | -0.8915178077 |
| GSE9593 | Up | 0.1370247213 |
| GSE43922 | Down | -0.0523719114 |
| GSE24585 | Down | -0.4022769477 |
| GSE37065 | Down | -0.0723135572 |
| GSE28863_A1 | Up | 0.1284963434 |
| GSE28863_A2 | Up | 0.7131173870 |
| GSE28863_A3 | Down | -0.7356376485 |
| GSE28863_A4 | Down | -0.2579839259 |
| GSE48662 | Down | -0.1972425474 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020963 | Proteomics | Functional MTI (Weak) | 20584899 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023046 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026871 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027805 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030158 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040383 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043138 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-365a-3p | MIMAT0000710 | MIRT044026 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
