HCSGD entry for COL21A1
1. General information
| Official gene symbol | COL21A1 |
|---|---|
| Entrez ID | 81578 |
| Gene full name | collagen, type XXI, alpha 1 |
| Other gene symbols | COLA1L dJ682J15.1 dJ708F5.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0031012 | Extracellular matrix | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0815222522 | 0.2153474792 | 0.6022787819 | 0.8951825154 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3615130569 |
| GSE13712_SHEAR | Down | -1.0755800219 |
| GSE13712_STATIC | Down | -1.8202820754 |
| GSE19018 | Up | 0.1184475807 |
| GSE19899_A1 | Up | 0.0086168547 |
| GSE19899_A2 | Up | 0.0151580512 |
| PubMed_21979375_A1 | Up | 0.3025081450 |
| PubMed_21979375_A2 | Up | 0.4868711911 |
| GSE35957 | Up | 0.2941517062 |
| GSE36640 | Up | 0.4958490754 |
| GSE54402 | Down | -0.1067881081 |
| GSE9593 | Up | 0.3184013843 |
| GSE43922 | Up | 0.0168543487 |
| GSE24585 | Up | 0.7375026655 |
| GSE37065 | Down | -0.3388191688 |
| GSE28863_A1 | Down | -0.0098799969 |
| GSE28863_A2 | Up | 0.0210499910 |
| GSE28863_A3 | Up | 0.1635465956 |
| GSE28863_A4 | Up | 0.0438786190 |
| GSE48662 | Up | 0.2298256558 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-29c-3p | MIMAT0000681 | MIRT006383 | Luciferase reporter assay | Functional MTI | 21436257 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018264 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
