HCSGD entry for VOPP1
1. General information
| Official gene symbol | VOPP1 |
|---|---|
| Entrez ID | 81552 |
| Gene full name | vesicular, overexpressed in cancer, prosurvival protein 1 |
| Other gene symbols | ECOP GASP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004871 | Signal transducer activity | IMP | molecular_function |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0007165 | Signal transduction | IMP | biological_process |
| GO:0030659 | Cytoplasmic vesicle membrane | IDA IEA | cellular_component |
| GO:0031301 | Integral component of organelle membrane | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5517060674 | 0.1853687322 | 0.9999902473 | 0.8347460051 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1339187696 |
| GSE13712_SHEAR | Up | 0.2856047775 |
| GSE13712_STATIC | Up | 0.2108712946 |
| GSE19018 | Up | 0.4424613937 |
| GSE19899_A1 | Down | -0.7188128532 |
| GSE19899_A2 | Down | -0.4072491059 |
| PubMed_21979375_A1 | Down | -0.4563977564 |
| PubMed_21979375_A2 | Up | 0.4863898913 |
| GSE35957 | Up | 0.0099331863 |
| GSE36640 | Up | 0.0086998939 |
| GSE54402 | Down | -0.2823653409 |
| GSE9593 | Up | 0.2488290655 |
| GSE43922 | Down | -0.0989442156 |
| GSE24585 | Down | -0.2571917924 |
| GSE37065 | Down | -0.1075959582 |
| GSE28863_A1 | Down | -0.2678178270 |
| GSE28863_A2 | Up | 0.2565351330 |
| GSE28863_A3 | Up | 0.1513116621 |
| GSE28863_A4 | Down | -0.2890669548 |
| GSE48662 | Up | 0.0607083850 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-218-5p | MIMAT0000275 | MIRT004541 | qRT-PCR//Microarray | Functional MTI (Weak) | 19168627 |
| hsa-miR-218-5p | MIMAT0000275 | MIRT004541 | Luciferase reporter assay//qRT-PCR | Functional MTI | 19890957 |
| hsa-miR-320b | MIMAT0005792 | MIRT036210 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036923 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042822 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044677 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046506 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-218-5p | MIMAT0000275 | 1 | hsa-miR-218 | 19890957 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
