HCSGD entry for COLEC12
1. General information
| Official gene symbol | COLEC12 |
|---|---|
| Entrez ID | 81035 |
| Gene full name | collectin sub-family member 12 |
| Other gene symbols | CLP1 NSR2 SCARA4 SRCL |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0002221 | Pattern recognition receptor signaling pathway | IDA | biological_process |
| GO:0005044 | Scavenger receptor activity | TAS | molecular_function |
| GO:0005534 | Galactose binding | NAS | molecular_function |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0006898 | Receptor-mediated endocytosis | TAS | biological_process |
| GO:0006910 | Phagocytosis, recognition | IDA | biological_process |
| GO:0006952 | Defense response | TAS | biological_process |
| GO:0008329 | Signaling pattern recognition receptor activity | IDA | molecular_function |
| GO:0009756 | Carbohydrate mediated signaling | NAS | biological_process |
| GO:0016021 | Integral component of membrane | TAS | cellular_component |
| GO:0030169 | Low-density lipoprotein particle binding | IDA | molecular_function |
| GO:0030666 | Endocytic vesicle membrane | TAS | cellular_component |
| GO:0045087 | Innate immune response | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0051260 | Protein homooligomerization | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0092923977 | 0.0101550245 | 0.2468064581 | 0.1999180254 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.7027462324 |
| GSE13712_SHEAR | Down | -1.7709202837 |
| GSE13712_STATIC | Down | -1.8483453329 |
| GSE19018 | Down | -0.9296009899 |
| GSE19899_A1 | Up | 0.0752138566 |
| GSE19899_A2 | Up | 0.8742108548 |
| PubMed_21979375_A1 | Down | -0.1290978004 |
| PubMed_21979375_A2 | Up | 1.3840336537 |
| GSE35957 | Down | -3.8882017614 |
| GSE36640 | Down | -1.1495173495 |
| GSE54402 | Up | 1.4062211998 |
| GSE9593 | Down | -0.0623046038 |
| GSE43922 | Up | 0.0904862681 |
| GSE24585 | Down | -0.3195644909 |
| GSE37065 | Down | -0.1612875679 |
| GSE28863_A1 | Up | 2.1329809552 |
| GSE28863_A2 | Up | 0.8716964777 |
| GSE28863_A3 | Up | 0.4321025629 |
| GSE28863_A4 | Up | 0.1424487320 |
| GSE48662 | Down | -0.8206983219 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-9-5p | MIMAT0000441 | MIRT021483 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025879 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029943 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
