HCSGD entry for CCDC6
1. General information
| Official gene symbol | CCDC6 |
|---|---|
| Entrez ID | 8030 |
| Gene full name | coiled-coil domain containing 6 |
| Other gene symbols | D10S170 H4 PTC TPC TST1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005200 | Structural constituent of cytoskeleton | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0017124 | SH3 domain binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8139291858 | 0.3164497208 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1718817911 |
| GSE13712_SHEAR | Down | -0.0860685638 |
| GSE13712_STATIC | Up | 0.0720395757 |
| GSE19018 | Up | 0.0975893470 |
| GSE19899_A1 | Down | -0.2664163703 |
| GSE19899_A2 | Down | -0.1175139513 |
| PubMed_21979375_A1 | Up | 0.1024018416 |
| PubMed_21979375_A2 | Down | -0.1056885180 |
| GSE35957 | Up | 0.3164202200 |
| GSE36640 | Up | 0.1051628831 |
| GSE54402 | Down | -0.1423270110 |
| GSE9593 | Up | 0.4916625653 |
| GSE43922 | Down | -0.0773597940 |
| GSE24585 | Down | -0.3648315667 |
| GSE37065 | Down | -0.0262383083 |
| GSE28863_A1 | Down | -0.0564782326 |
| GSE28863_A2 | Up | 0.0054983714 |
| GSE28863_A3 | Down | -0.3289587546 |
| GSE28863_A4 | Up | 0.0816725238 |
| GSE48662 | Up | 0.0507915035 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-128-3p | MIMAT0000424 | MIRT021879 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025091 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-331-5p | MIMAT0004700 | MIRT038182 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-342-3p | MIMAT0000753 | MIRT043723 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048602 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT048991 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
