HCSGD entry for CHD9
1. General information
| Official gene symbol | CHD9 |
|---|---|
| Entrez ID | 80205 |
| Gene full name | chromodomain helicase DNA binding protein 9 |
| Other gene symbols | AD013 CReMM KISH2 PRIC320 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0004386 | Helicase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0016817 | Hydrolase activity, acting on acid anhydrides | IEA | molecular_function |
| GO:0044255 | Cellular lipid metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3086215417 | 0.6135239885 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0304808515 |
| GSE13712_SHEAR | Up | 0.3279663786 |
| GSE13712_STATIC | Up | 0.0292054257 |
| GSE19018 | Up | 0.1204951689 |
| GSE19899_A1 | Down | -0.1391655285 |
| GSE19899_A2 | Down | -0.3024797112 |
| PubMed_21979375_A1 | Down | -0.3368392777 |
| PubMed_21979375_A2 | Up | 0.0251679086 |
| GSE35957 | Down | -0.1018640385 |
| GSE36640 | Down | -0.0667487681 |
| GSE54402 | Down | -0.0365603926 |
| GSE9593 | Down | -0.1764415482 |
| GSE43922 | Down | -0.1386451442 |
| GSE24585 | Up | 0.1815430978 |
| GSE37065 | Up | 0.2785188054 |
| GSE28863_A1 | Up | 0.6796857431 |
| GSE28863_A2 | Up | 0.5900254725 |
| GSE28863_A3 | Down | -0.1831813092 |
| GSE28863_A4 | Up | 0.1165697520 |
| GSE48662 | Down | -0.0579908836 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-210-3p | MIMAT0000267 | MIRT003181 | immunoprecipitaion//Microarray//qRT-PCR | Functional MTI (Weak) | 19826008 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020560 | Reporter assay;Other | Non-Functional MTI | 20584899 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025670 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028901 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051555 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
