HCSGD entry for VCPIP1
1. General information
| Official gene symbol | VCPIP1 |
|---|---|
| Entrez ID | 80124 |
| Gene full name | valosin containing protein (p97)/p47 complex interacting protein 1 |
| Other gene symbols | DUBA3 VCIP135 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004843 | Ubiquitin-specific protease activity | IDA ISS | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005795 | Golgi stack | IEA | cellular_component |
| GO:0006508 | Proteolysis | IEA | biological_process |
| GO:0007067 | Mitosis | IEA | biological_process |
| GO:0016320 | Endoplasmic reticulum membrane fusion | IEA | biological_process |
| GO:0016567 | Protein ubiquitination | ISS | biological_process |
| GO:0035871 | Protein K11-linked deubiquitination | IDA | biological_process |
| GO:0071108 | Protein K48-linked deubiquitination | IDA | biological_process |
| GO:0090168 | Golgi reassembly | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0037826336 | 0.9962969872 | 0.1648137190 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0929106333 |
| GSE13712_SHEAR | Up | 0.3240554575 |
| GSE13712_STATIC | Up | 0.3311136459 |
| GSE19018 | Up | 0.3247951773 |
| GSE19899_A1 | Up | 0.2298724467 |
| GSE19899_A2 | Up | 0.9445489396 |
| PubMed_21979375_A1 | Up | 0.9827631456 |
| PubMed_21979375_A2 | Up | 0.5790558014 |
| GSE35957 | Up | 0.6344295527 |
| GSE36640 | Up | 0.7652125553 |
| GSE54402 | Up | 0.2379002784 |
| GSE9593 | Up | 0.2766035847 |
| GSE43922 | Up | 0.1410556697 |
| GSE24585 | Up | 0.2355259948 |
| GSE37065 | Up | 0.1312887404 |
| GSE28863_A1 | Up | 0.7849409338 |
| GSE28863_A2 | Up | 0.7072120413 |
| GSE28863_A3 | Down | -0.1057319284 |
| GSE28863_A4 | Up | 0.2582025147 |
| GSE48662 | Down | -0.2614176355 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-877-3p | MIMAT0004950 | MIRT036959 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041551 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-361-5p | MIMAT0000703 | MIRT044061 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049244 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052693 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
