HCSGD entry for TRMT2B
1. General information
| Official gene symbol | TRMT2B |
|---|---|
| Entrez ID | 79979 |
| Gene full name | tRNA methyltransferase 2 homolog B (S. cerevisiae) |
| Other gene symbols | CXorf34 dJ341D10.3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0030697 | S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3478709661 | 0.4060441928 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1678351499 |
| GSE13712_SHEAR | Up | 0.1246833815 |
| GSE13712_STATIC | Up | 0.0196642171 |
| GSE19018 | Up | 0.0972206116 |
| GSE19899_A1 | Down | -0.0364506608 |
| GSE19899_A2 | Up | 0.5127454453 |
| PubMed_21979375_A1 | Up | 0.3324339580 |
| PubMed_21979375_A2 | Down | -0.3538463189 |
| GSE35957 | Up | 0.2748361900 |
| GSE36640 | Up | 0.0618255115 |
| GSE54402 | Down | -0.0284943191 |
| GSE9593 | Up | 0.1189459976 |
| GSE43922 | Down | -0.0871345211 |
| GSE24585 | Down | -0.2811528140 |
| GSE37065 | Up | 0.0601088600 |
| GSE28863_A1 | Down | -0.3469703564 |
| GSE28863_A2 | Up | 0.2835032062 |
| GSE28863_A3 | Down | -0.8331295844 |
| GSE28863_A4 | Up | 0.1870661626 |
| GSE48662 | Up | 0.2728469701 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028766 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
