HCSGD entry for PTCD2
1. General information
| Official gene symbol | PTCD2 |
|---|---|
| Entrez ID | 79810 |
| Gene full name | pentatricopeptide repeat domain 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001822 | Kidney development | IEA | biological_process |
| GO:0001889 | Liver development | IEA | biological_process |
| GO:0005739 | Mitochondrion | IDA IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0007005 | Mitochondrion organization | IEA | biological_process |
| GO:0048747 | Muscle fiber development | IEA | biological_process |
| GO:0050684 | Regulation of mRNA processing | IEA ISS | biological_process |
| GO:0055010 | Ventricular cardiac muscle tissue morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3689313894 | 0.7141553056 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3241428884 |
| GSE13712_SHEAR | Up | 0.7206425355 |
| GSE13712_STATIC | Up | 0.2192638669 |
| GSE19018 | Up | 0.2026036742 |
| GSE19899_A1 | Down | -0.1170260887 |
| GSE19899_A2 | Up | 0.0730080879 |
| PubMed_21979375_A1 | Up | 0.1049771267 |
| PubMed_21979375_A2 | Down | -0.3937087586 |
| GSE35957 | Down | -0.0337480555 |
| GSE36640 | Up | 0.2779796776 |
| GSE54402 | Down | -0.2525859832 |
| GSE9593 | Up | 0.0995016231 |
| GSE43922 | Down | -0.0691202118 |
| GSE24585 | Down | -0.1654578092 |
| GSE37065 | Up | 0.0312872624 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0742219469 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-423-3p | MIMAT0001340 | MIRT042615 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
