HCSGD entry for ZNF408
1. General information
| Official gene symbol | ZNF408 |
|---|---|
| Entrez ID | 79797 |
| Gene full name | zinc finger protein 408 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0640362372 | 0.9360839330 | 0.5451347671 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3378706668 |
| GSE13712_SHEAR | Down | -0.0170213954 |
| GSE13712_STATIC | Up | 0.2165263363 |
| GSE19018 | Down | -0.2419184864 |
| GSE19899_A1 | Up | 0.1368253748 |
| GSE19899_A2 | Up | 0.8323049788 |
| PubMed_21979375_A1 | Up | 1.3083723353 |
| PubMed_21979375_A2 | Up | 1.3464671674 |
| GSE35957 | Up | 0.0586497986 |
| GSE36640 | Up | 0.1473152297 |
| GSE54402 | Up | 0.1951378276 |
| GSE9593 | Down | -0.1469886547 |
| GSE43922 | Up | 0.2017630584 |
| GSE24585 | Down | -0.1322146794 |
| GSE37065 | Down | -0.0629736674 |
| GSE28863_A1 | Down | -0.1063644647 |
| GSE28863_A2 | Up | 0.0084135567 |
| GSE28863_A3 | Up | 0.0416361686 |
| GSE28863_A4 | Down | -0.0811368927 |
| GSE48662 | Up | 0.2093636899 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-339-5p | MIMAT0000764 | MIRT042778 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
