HCSGD entry for C12orf49
1. General information
| Official gene symbol | C12orf49 |
|---|---|
| Entrez ID | 79794 |
| Gene full name | chromosome 12 open reading frame 49 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1817535694 | 0.6136823753 | 0.8355688788 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1636471417 |
| GSE13712_SHEAR | Down | -0.1251752236 |
| GSE13712_STATIC | Down | -0.2883614726 |
| GSE19018 | Down | -0.5386192068 |
| GSE19899_A1 | Up | 0.2514521645 |
| GSE19899_A2 | Up | 0.6500227888 |
| PubMed_21979375_A1 | Up | 0.7272328924 |
| PubMed_21979375_A2 | Up | 0.8325476956 |
| GSE35957 | Up | 0.1220784628 |
| GSE36640 | Up | 0.1277758677 |
| GSE54402 | Up | 0.2224772588 |
| GSE9593 | Up | 0.1134115775 |
| GSE43922 | Up | 0.5256054630 |
| GSE24585 | Up | 0.0318734065 |
| GSE37065 | Down | -0.1078780679 |
| GSE28863_A1 | Down | -0.2536009160 |
| GSE28863_A2 | Down | -0.2622452250 |
| GSE28863_A3 | Down | -0.3539671217 |
| GSE28863_A4 | Up | 0.0575333760 |
| GSE48662 | Down | -0.1546445229 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT003849 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-1 | MIMAT0000416 | MIRT003849 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016544 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051453 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052145 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
