HCSGD entry for COLGALT1
1. General information
| Official gene symbol | COLGALT1 |
|---|---|
| Entrez ID | 79709 |
| Gene full name | collagen beta(1-O)galactosyltransferase 1 |
| Other gene symbols | GLT25D1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005788 | Endoplasmic reticulum lumen | IDA TAS | cellular_component |
| GO:0009103 | Lipopolysaccharide biosynthetic process | IEA | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0050211 | Procollagen galactosyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3045629611 | 0.1621796094 | 0.9999902473 | 0.7779714780 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2519797983 |
| GSE13712_SHEAR | Down | -0.0302222050 |
| GSE13712_STATIC | Down | -0.2659513508 |
| GSE19018 | Up | 0.5557567700 |
| GSE19899_A1 | Up | 0.0726435344 |
| GSE19899_A2 | Up | 0.4354808472 |
| PubMed_21979375_A1 | Up | 0.6296543349 |
| PubMed_21979375_A2 | Down | -0.0640665296 |
| GSE35957 | Down | -0.4699531079 |
| GSE36640 | Down | -0.6051408811 |
| GSE54402 | Down | -0.2038587696 |
| GSE9593 | Up | 0.4173647697 |
| GSE43922 | Up | 0.4315456565 |
| GSE24585 | Down | -0.7678455555 |
| GSE37065 | Down | -0.3635318035 |
| GSE28863_A1 | Up | 0.4038764824 |
| GSE28863_A2 | Up | 0.1048211891 |
| GSE28863_A3 | Down | -0.3471678865 |
| GSE28863_A4 | Down | -0.0199338092 |
| GSE48662 | Up | 0.0863056838 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020546 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022180 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027402 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037553 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-532-3p | MIMAT0004780 | MIRT037931 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
