HCSGD entry for YRDC
1. General information
| Official gene symbol | YRDC |
|---|---|
| Entrez ID | 79693 |
| Gene full name | yrdC domain containing (E. coli) |
| Other gene symbols | DRIP3 IRIP RP11-109P14.4 SUA5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003725 | Double-stranded RNA binding | IEA | molecular_function |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0051051 | Negative regulation of transport | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0032298697 | 0.5410040728 | 0.1531772973 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1815078441 |
| GSE13712_SHEAR | Up | 0.5000384394 |
| GSE13712_STATIC | Up | 0.4583054789 |
| GSE19018 | Down | -0.5179331620 |
| GSE19899_A1 | Up | 0.7799031463 |
| GSE19899_A2 | Up | 1.8950684453 |
| PubMed_21979375_A1 | Up | 1.8458156925 |
| PubMed_21979375_A2 | Up | 1.5576535231 |
| GSE35957 | Up | 0.2039227588 |
| GSE36640 | Down | -0.1913123485 |
| GSE54402 | Up | 1.2529694276 |
| GSE9593 | Down | -0.1834150674 |
| GSE43922 | Up | 0.9104706828 |
| GSE24585 | Down | -0.8463754228 |
| GSE37065 | Up | 0.0954054931 |
| GSE28863_A1 | Up | 0.0673421202 |
| GSE28863_A2 | Up | 0.5938919772 |
| GSE28863_A3 | Down | -0.1206581809 |
| GSE28863_A4 | Down | -0.0716061798 |
| GSE48662 | Down | -0.2520171619 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT016622 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT016659 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028515 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037881 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044445 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
