HCSGD entry for FYCO1
1. General information
| Official gene symbol | FYCO1 |
|---|---|
| Entrez ID | 79443 |
| Gene full name | FYVE and coiled-coil domain containing 1 |
| Other gene symbols | CATC2 RUFY3 ZFYVE7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005764 | Lysosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IDA | cellular_component |
| GO:0005776 | Autophagic vacuole | IDA | cellular_component |
| GO:0006810 | Transport | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0031410 | Cytoplasmic vesicle | IEA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0072383 | Plus-end-directed vesicle transport along microtubule | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0285145967 | 0.8794648380 | 0.3927398230 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1171325096 |
| GSE13712_SHEAR | Up | 0.0149361727 |
| GSE13712_STATIC | Up | 0.1278397891 |
| GSE19018 | Up | 0.0592398841 |
| GSE19899_A1 | Up | 0.3184755584 |
| GSE19899_A2 | Up | 0.4049288586 |
| PubMed_21979375_A1 | Down | -0.8607352965 |
| PubMed_21979375_A2 | Up | 0.5617846069 |
| GSE35957 | Up | 0.1288948783 |
| GSE36640 | Up | 1.2685194043 |
| GSE54402 | Down | -0.3479661185 |
| GSE9593 | Up | 0.3216400128 |
| GSE43922 | Up | 0.1108086036 |
| GSE24585 | Down | -0.1563722899 |
| GSE37065 | Down | -0.0209992493 |
| GSE28863_A1 | Up | 1.0880081700 |
| GSE28863_A2 | Up | 0.9231694418 |
| GSE28863_A3 | Down | -0.0124450350 |
| GSE28863_A4 | Up | 0.0449055318 |
| GSE48662 | Up | 0.0684555962 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT002515 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020327 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028103 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031214 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040067 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041649 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-5p | MIMAT0000731 | MIRT044011 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049010 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
