HCSGD entry for DDX39B
1. General information
| Official gene symbol | DDX39B |
|---|---|
| Entrez ID | 7919 |
| Gene full name | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B |
| Other gene symbols | BAT1 D6S81E UAP56 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | IDA | biological_process |
| GO:0000346 | Transcription export complex | IDA | cellular_component |
| GO:0000398 | MRNA splicing, via spliceosome | IGI | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0004004 | ATP-dependent RNA helicase activity | IDA | molecular_function |
| GO:0004386 | Helicase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005687 | U4 snRNP | IDA | cellular_component |
| GO:0005688 | U6 snRNP | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006200 | ATP catabolic process | IDA TAS | biological_process |
| GO:0006406 | MRNA export from nucleus | IDA IGI | biological_process |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
| GO:0008186 | RNA-dependent ATPase activity | IDA | molecular_function |
| GO:0008380 | RNA splicing | IDA | biological_process |
| GO:0010501 | RNA secondary structure unwinding | IDA | biological_process |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
| GO:0017070 | U6 snRNA binding | IDA | molecular_function |
| GO:0030621 | U4 snRNA binding | IDA | molecular_function |
| GO:0032786 | Positive regulation of DNA-templated transcription, elongation | IMP | biological_process |
| GO:0043008 | ATP-dependent protein binding | IDA | molecular_function |
| GO:0046784 | Viral mRNA export from host cell nucleus | IDA | biological_process |
| GO:2000002 | Negative regulation of DNA damage checkpoint | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9863165077 | 0.3923820562 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | - | - |
| GSE13712_SHEAR | - | - |
| GSE13712_STATIC | - | - |
| GSE19018 | - | - |
| GSE19899_A1 | - | - |
| GSE19899_A2 | - | - |
| PubMed_21979375_A1 | - | - |
| PubMed_21979375_A2 | - | - |
| GSE35957 | - | - |
| GSE36640 | - | - |
| GSE54402 | - | - |
| GSE9593 | - | - |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.1335459418 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Isopropyl Alcohol | DB02325 | EXPT01912 | DB04402 |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-93-5p | MIMAT0000093 | MIRT028060 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
