HCSGD entry for RBM42
1. General information
| Official gene symbol | RBM42 |
|---|---|
| Entrez ID | 79171 |
| Gene full name | RNA binding motif protein 42 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5759075187 | 0.1375900384 | 0.9999902473 | 0.7145831492 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1017687503 |
| GSE13712_SHEAR | Up | 0.0212002018 |
| GSE13712_STATIC | Down | -0.0002411242 |
| GSE19018 | Down | -0.2078179731 |
| GSE19899_A1 | Down | -0.5052249546 |
| GSE19899_A2 | Up | 0.3779233525 |
| PubMed_21979375_A1 | Up | 0.5726958546 |
| PubMed_21979375_A2 | Up | 1.1391005850 |
| GSE35957 | Down | -0.5549234017 |
| GSE36640 | Down | -0.3733842785 |
| GSE54402 | Up | 0.1021982597 |
| GSE9593 | Down | -0.2238805343 |
| GSE43922 | Up | 0.0519128110 |
| GSE24585 | Down | -0.0857335558 |
| GSE37065 | Down | -0.1979974333 |
| GSE28863_A1 | Down | -0.1484624798 |
| GSE28863_A2 | Down | -0.3361618462 |
| GSE28863_A3 | Down | -0.5766687318 |
| GSE28863_A4 | Up | 0.0530277176 |
| GSE48662 | Up | 0.1974814200 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020582 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT023566 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036026 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042113 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
