HCSGD entry for TAF1D
1. General information
| Official gene symbol | TAF1D |
|---|---|
| Entrez ID | 79101 |
| Gene full name | TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa |
| Other gene symbols | JOSD3 RAFI41 TAF(I)41 TAFI41 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005668 | RNA polymerase transcription factor SL1 complex | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9237854527 | 0.0425112648 | 0.9999902473 | 0.3877461538 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3562455978 |
| GSE13712_SHEAR | Up | 0.6840824562 |
| GSE13712_STATIC | Down | -0.1746431641 |
| GSE19018 | Down | -0.9533615754 |
| GSE19899_A1 | Down | -0.0924963151 |
| GSE19899_A2 | Down | -0.1052095187 |
| PubMed_21979375_A1 | Down | -0.6597774104 |
| PubMed_21979375_A2 | Up | 0.1926038387 |
| GSE35957 | Down | -0.7488072351 |
| GSE36640 | Up | 0.0970187949 |
| GSE54402 | Down | -0.2742205974 |
| GSE9593 | Down | -0.4964730482 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0890242043 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016190 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027628 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036069 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
