HCSGD entry for SEMA3B
1. General information
| Official gene symbol | SEMA3B |
|---|---|
| Entrez ID | 7869 |
| Gene full name | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B |
| Other gene symbols | LUCA-1 SEMA5 SEMAA SemA semaV |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004872 | Receptor activity | IEA | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0007267 | Cell-cell signaling | TAS | biological_process |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4695204969 | 0.8403601117 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2268288438 |
| GSE13712_SHEAR | Down | -0.0264206015 |
| GSE13712_STATIC | Up | 0.0200573026 |
| GSE19018 | Up | 0.0344102682 |
| GSE19899_A1 | Up | 0.0453023137 |
| GSE19899_A2 | Up | 0.0102697343 |
| PubMed_21979375_A1 | Down | -0.1420989414 |
| PubMed_21979375_A2 | Up | 0.1086361175 |
| GSE35957 | Up | 0.1402784367 |
| GSE36640 | Down | -0.0073658898 |
| GSE54402 | Down | -0.0441966359 |
| GSE9593 | Down | -0.0851071174 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.5921146308 |
| GSE28863_A2 | Down | -0.0718283478 |
| GSE28863_A3 | Up | 0.0305250627 |
| GSE28863_A4 | Up | 0.1036604594 |
| GSE48662 | Up | 0.5736500894 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016807 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
