HCSGD entry for CACNA1F
1. General information
| Official gene symbol | CACNA1F |
|---|---|
| Entrez ID | 778 |
| Gene full name | calcium channel, voltage-dependent, L type, alpha 1F subunit |
| Other gene symbols | AIED COD3 COD4 CORDX CORDX3 CSNB2 CSNB2A CSNBX2 Cav1.4 JM8 JMC8 OA2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001750 | Photoreceptor outer segment | IEA | cellular_component |
| GO:0005245 | Voltage-gated calcium channel activity | IDA | molecular_function |
| GO:0005891 | Voltage-gated calcium channel complex | IDA | cellular_component |
| GO:0006874 | Cellular calcium ion homeostasis | IEA | biological_process |
| GO:0007409 | Axonogenesis | IEA | biological_process |
| GO:0007601 | Visual perception | IMP | biological_process |
| GO:0016021 | Integral component of membrane | IDA | cellular_component |
| GO:0043204 | Perikaryon | IEA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0048813 | Dendrite morphogenesis | IEA | biological_process |
| GO:0050908 | Detection of light stimulus involved in visual perception | IMP | biological_process |
| GO:0060041 | Retina development in camera-type eye | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4733223358 | 0.9262064929 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1214238414 |
| GSE13712_SHEAR | Up | 0.1337525751 |
| GSE13712_STATIC | Up | 0.0795818656 |
| GSE19018 | Up | 0.0174765688 |
| GSE19899_A1 | Up | 0.1032498804 |
| GSE19899_A2 | Up | 0.2273510108 |
| PubMed_21979375_A1 | Down | -0.0482310755 |
| PubMed_21979375_A2 | Down | -0.0499953838 |
| GSE35957 | Up | 0.1809650364 |
| GSE36640 | Up | 0.0937262384 |
| GSE54402 | Up | 0.0935831067 |
| GSE9593 | Up | 0.2327877976 |
| GSE43922 | Up | 0.0584774694 |
| GSE24585 | Up | 0.0817561989 |
| GSE37065 | Down | -0.0965191432 |
| GSE28863_A1 | Down | -0.0180703886 |
| GSE28863_A2 | Down | -0.0799328900 |
| GSE28863_A3 | Up | 0.2635787037 |
| GSE28863_A4 | Up | 0.0903679352 |
| GSE48662 | Up | 0.0300613192 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Cinnarizine | DB00568 | APRD00332 |
| Verapamil | DB00661 | APRD00335 |
| Mibefradil | DB01388 | - |
| Dronedarone | DB04855 | - |
| Clevidipine | DB04920 | - |
| Spironolactone | DB00421 | APRD01234 |
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
