HCSGD entry for BEST1

1. General information

Official gene symbolBEST1
Entrez ID7439
Gene full namebestrophin 1
Other gene symbolsARB BEST BMD RP50 TU15B VMD2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005254Chloride channel activityIDAmolecular_function
GO:0005829CytosolTAScellular_component
GO:0005886Plasma membraneTAScellular_component
GO:0006821Chloride transportIDAbiological_process
GO:0007601Visual perceptionTASbiological_process
GO:0016020MembraneTAScellular_component
GO:0016021Integral component of membraneTAScellular_component
GO:0016323Basolateral plasma membraneIDAcellular_component
GO:0030321Transepithelial chloride transportIDA IEAbiological_process
GO:0034220Ion transmembrane transportTASbiological_process
GO:0034707Chloride channel complexIEAcellular_component
GO:0050908Detection of light stimulus involved in visual perceptionIEAbiological_process
GO:0051924Regulation of calcium ion transportIEAbiological_process
GO:0055085Transmembrane transportTASbiological_process
GO:1902476Chloride transmembrane transportIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.16676246720.97052811820.80671841571.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0554898901
GSE13712_SHEARUp0.0378589244
GSE13712_STATICUp0.0984679375
GSE19018Up0.0972642874
GSE19899_A1Up0.0388560209
GSE19899_A2Up0.2037616915
PubMed_21979375_A1Down-0.1609577308
PubMed_21979375_A2Up0.2439446253
GSE35957Up0.1010981816
GSE36640Down-0.0089298003
GSE54402Down-0.1337321446
GSE9593Up0.4663359614
GSE43922Up0.0287892187
GSE24585Up0.2321056148
GSE37065Up0.3080628234
GSE28863_A1Up0.1338073595
GSE28863_A2Up0.3480764951
GSE28863_A3Up0.0089624321
GSE28863_A4Up0.1017326786
GSE48662Up0.3612318782

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.