HCSGD entry for VBP1
1. General information
| Official gene symbol | VBP1 |
|---|---|
| Entrez ID | 7411 |
| Gene full name | von Hippel-Lindau binding protein 1 |
| Other gene symbols | PFD3 PFDN3 VBP-1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006457 | Protein folding | IEA TAS | biological_process |
| GO:0016272 | Prefoldin complex | IEA | cellular_component |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0051082 | Unfolded protein binding | IEA | molecular_function |
| GO:0051084 | 'de novo' posttranslational protein folding | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5499782493 | 0.1224014741 | 0.9999902473 | 0.6713334445 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2225500786 |
| GSE13712_SHEAR | Down | -0.1728657186 |
| GSE13712_STATIC | Down | -0.0057415459 |
| GSE19018 | Down | -0.2804731073 |
| GSE19899_A1 | Up | 0.1541328940 |
| GSE19899_A2 | Down | -0.3650410334 |
| PubMed_21979375_A1 | Up | 0.2925965552 |
| PubMed_21979375_A2 | Down | -0.1231233500 |
| GSE35957 | Down | -0.3936958923 |
| GSE36640 | Down | -0.1927257691 |
| GSE54402 | Up | 0.2887152057 |
| GSE9593 | Down | -0.3261776067 |
| GSE43922 | Up | 0.0569612545 |
| GSE24585 | Down | -0.1985342250 |
| GSE37065 | Up | 0.0653007310 |
| GSE28863_A1 | Up | 0.1603289637 |
| GSE28863_A2 | Up | 0.3825897900 |
| GSE28863_A3 | Down | -0.8240520787 |
| GSE28863_A4 | Up | 0.3346821174 |
| GSE48662 | Down | -1.0383974327 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020511 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-361-5p | MIMAT0000703 | MIRT044083 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT048922 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
