HCSGD entry for USH2A
1. General information
Official gene symbol | USH2A |
---|---|
Entrez ID | 7399 |
Gene full name | Usher syndrome 2A (autosomal recessive, mild) |
Other gene symbols | RP39 US2 USH2 dJ1111A8.1 |
Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network

This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
---|---|---|---|
GO:0002142 | Stereocilia ankle link complex | ISS | cellular_component |
GO:0005515 | Protein binding | IPI | molecular_function |
GO:0005518 | Collagen binding | IDA | molecular_function |
GO:0005604 | Basement membrane | IDA | cellular_component |
GO:0005737 | Cytoplasm | IDA | cellular_component |
GO:0007601 | Visual perception | IEA | biological_process |
GO:0007605 | Sensory perception of sound | IMP | biological_process |
GO:0016021 | Integral component of membrane | IEA | cellular_component |
GO:0016324 | Apical plasma membrane | ISS | cellular_component |
GO:0017022 | Myosin binding | ISS | molecular_function |
GO:0032421 | Stereocilium bundle | ISS | cellular_component |
GO:0035315 | Hair cell differentiation | ISS | biological_process |
GO:0045494 | Photoreceptor cell maintenance | IMP | biological_process |
GO:0048496 | Maintenance of organ identity | IMP | biological_process |
GO:0050896 | Response to stimulus | IEA | biological_process |
GO:0050953 | Sensory perception of light stimulus | IMP | biological_process |
GO:0060113 | Inner ear receptor cell differentiation | ISS | biological_process |
GO:0060171 | Stereocilium membrane | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
p-value up | p-value down | FDR up | FDR down |
---|---|---|---|
0.7756108355 | 0.8557089130 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
Data source | Up or down | Log fold change |
---|---|---|
GSE11954 | Down | -0.0039605033 |
GSE13712_SHEAR | Up | 0.1124583717 |
GSE13712_STATIC | Down | -0.0467617468 |
GSE19018 | Up | 0.1840427345 |
GSE19899_A1 | Down | -0.0649470860 |
GSE19899_A2 | Down | -0.1044477583 |
PubMed_21979375_A1 | Down | -0.1922961274 |
PubMed_21979375_A2 | Up | 0.0419957254 |
GSE35957 | Up | 0.1135522807 |
GSE36640 | Up | 0.0723997021 |
GSE54402 | Up | 0.1203757866 |
GSE9593 | Down | -0.0880282626 |
GSE43922 | Up | 0.0116557312 |
GSE24585 | Up | 0.0381013203 |
GSE37065 | Down | -0.0060585596 |
GSE28863_A1 | Down | -0.0503631587 |
GSE28863_A2 | Up | 0.2575456236 |
GSE28863_A3 | Up | 0.1073739951 |
GSE28863_A4 | Up | 0.0058553526 |
GSE48662 | Up | 0.0321747027 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
---|---|---|---|---|---|
hsa-miR-335-5p | MIMAT0000765 | MIRT016756 | Microarray | Functional MTI (Weak) | 18185580 |
hsa-miR-124-3p | MIMAT0000422 | MIRT022120 | Microarray | Functional MTI (Weak) | 18668037 |
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