HCSGD entry for USH2A


1. General information

Official gene symbolUSH2A
Entrez ID7399
Gene full nameUsher syndrome 2A (autosomal recessive, mild)
Other gene symbolsRP39 US2 USH2 dJ1111A8.1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0002142Stereocilia ankle link complexISScellular_component
GO:0005515Protein bindingIPImolecular_function
GO:0005518Collagen bindingIDAmolecular_function
GO:0005604Basement membraneIDAcellular_component
GO:0005737CytoplasmIDAcellular_component
GO:0007601Visual perceptionIEAbiological_process
GO:0007605Sensory perception of soundIMPbiological_process
GO:0016021Integral component of membraneIEAcellular_component
GO:0016324Apical plasma membraneISScellular_component
GO:0017022Myosin bindingISSmolecular_function
GO:0032421Stereocilium bundleISScellular_component
GO:0035315Hair cell differentiationISSbiological_process
GO:0045494Photoreceptor cell maintenanceIMPbiological_process
GO:0048496Maintenance of organ identityIMPbiological_process
GO:0050896Response to stimulusIEAbiological_process
GO:0050953Sensory perception of light stimulusIMPbiological_process
GO:0060113Inner ear receptor cell differentiationISSbiological_process
GO:0060171Stereocilium membraneISScellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.77561083550.85570891300.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0039605033
GSE13712_SHEARUp0.1124583717
GSE13712_STATICDown-0.0467617468
GSE19018Up0.1840427345
GSE19899_A1Down-0.0649470860
GSE19899_A2Down-0.1044477583
PubMed_21979375_A1Down-0.1922961274
PubMed_21979375_A2Up0.0419957254
GSE35957Up0.1135522807
GSE36640Up0.0723997021
GSE54402Up0.1203757866
GSE9593Down-0.0880282626
GSE43922Up0.0116557312
GSE24585Up0.0381013203
GSE37065Down-0.0060585596
GSE28863_A1Down-0.0503631587
GSE28863_A2Up0.2575456236
GSE28863_A3Up0.1073739951
GSE28863_A4Up0.0058553526
GSE48662Up0.0321747027

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT016756MicroarrayFunctional MTI (Weak)18185580
hsa-miR-124-3pMIMAT0000422MIRT022120MicroarrayFunctional MTI (Weak)18668037
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.