HCSGD entry for TUB
1. General information
| Official gene symbol | TUB |
|---|---|
| Entrez ID | 7275 |
| Gene full name | tubby homolog (mouse) |
| Other gene symbols | rd5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | TAS | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006909 | Phagocytosis | IEA | biological_process |
| GO:0007602 | Phototransduction | IEA | biological_process |
| GO:0007605 | Sensory perception of sound | IEA | biological_process |
| GO:0008020 | G-protein coupled photoreceptor activity | IEA | molecular_function |
| GO:0009725 | Response to hormone | IEA | biological_process |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0044259 | Multicellular organismal macromolecule metabolic process | IEA | biological_process |
| GO:0050766 | Positive regulation of phagocytosis | IDA | biological_process |
| GO:0060041 | Retina development in camera-type eye | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9879759052 | 0.0088894153 | 0.9999902473 | 0.1869709729 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0316059414 |
| GSE13712_SHEAR | Down | -0.3355249575 |
| GSE13712_STATIC | Down | -0.7806217985 |
| GSE19018 | Down | -0.0187202148 |
| GSE19899_A1 | Down | -0.2530363924 |
| GSE19899_A2 | Down | -0.8043478437 |
| PubMed_21979375_A1 | Down | -1.8763919981 |
| PubMed_21979375_A2 | Down | -1.5079194586 |
| GSE35957 | Up | 0.0330121713 |
| GSE36640 | Down | -0.3200373890 |
| GSE54402 | Down | -0.4504884695 |
| GSE9593 | Up | 0.1215664010 |
| GSE43922 | Down | -0.8076466781 |
| GSE24585 | Down | -0.5582829712 |
| GSE37065 | Down | -0.1750497747 |
| GSE28863_A1 | Up | 0.1196555750 |
| GSE28863_A2 | Down | -0.0940657572 |
| GSE28863_A3 | Up | 0.1401196430 |
| GSE28863_A4 | Up | 0.0037439113 |
| GSE48662 | Down | -0.0349277591 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| L-Alpha-Glycerophospho-D-Myo-Inositol-4,5-Bis-Phosphate | DB02028 | EXPT01828 |
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-128-3p | MIMAT0000424 | MIRT021923 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT021923 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022311 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT024147 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-940 | MIMAT0004983 | MIRT036622 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037636 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044577 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-181c-5p | MIMAT0000258 | MIRT047219 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
