HCSGD entry for VPS72
1. General information
| Official gene symbol | VPS72 |
|---|---|
| Entrez ID | 6944 |
| Gene full name | vacuolar protein sorting 72 homolog (S. cerevisiae) |
| Other gene symbols | CFL1 Swc2 TCFL1 YL-1 YL1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0035019 | Somatic stem cell maintenance | IEA | biological_process |
| GO:0043234 | Protein complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9207184415 | 0.0337175411 | 0.9999902473 | 0.3469850665 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5812693494 |
| GSE13712_SHEAR | Down | -0.1593563315 |
| GSE13712_STATIC | Up | 0.0117114391 |
| GSE19018 | Down | -0.1352076913 |
| GSE19899_A1 | Down | -0.7747627575 |
| GSE19899_A2 | Up | 0.5203708706 |
| PubMed_21979375_A1 | Down | -0.0421871012 |
| PubMed_21979375_A2 | Down | -0.3167682038 |
| GSE35957 | Down | -0.9094165419 |
| GSE36640 | Down | -0.1571409111 |
| GSE54402 | Up | 0.1223072696 |
| GSE9593 | Down | -0.2603397574 |
| GSE43922 | Down | -0.1045175176 |
| GSE24585 | Down | -0.1116627942 |
| GSE37065 | Up | 0.0292282993 |
| GSE28863_A1 | Down | -0.6747623204 |
| GSE28863_A2 | Down | -0.4252228883 |
| GSE28863_A3 | Down | -0.0175384171 |
| GSE28863_A4 | Down | -0.2081728950 |
| GSE48662 | Down | -0.0203603889 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-615-3p | MIMAT0003283 | MIRT039650 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
