HCSGD entry for TCF20
1. General information
| Official gene symbol | TCF20 |
|---|---|
| Entrez ID | 6942 |
| Gene full name | transcription factor 20 (AR1) |
| Other gene symbols | AR1 SPBP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0003713 | Transcription coactivator activity | NAS | molecular_function |
| GO:0005634 | Nucleus | IEA NAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | NAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0044212 | Transcription regulatory region DNA binding | IEA | molecular_function |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0937630751 | 0.8638972341 | 0.6417893656 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0269716858 |
| GSE13712_SHEAR | Down | -0.1795689357 |
| GSE13712_STATIC | Up | 0.0428398758 |
| GSE19018 | Up | 0.1544241704 |
| GSE19899_A1 | Up | 0.0972930757 |
| GSE19899_A2 | Up | 0.1678298654 |
| PubMed_21979375_A1 | Up | 0.3500338959 |
| PubMed_21979375_A2 | Down | -0.1702145658 |
| GSE35957 | Down | -0.2925787740 |
| GSE36640 | Down | -0.5420609271 |
| GSE54402 | Up | 0.3770050796 |
| GSE9593 | Up | 0.0397992980 |
| GSE43922 | Up | 0.2007395406 |
| GSE24585 | Down | -0.1039308090 |
| GSE37065 | Up | 0.0479458708 |
| GSE28863_A1 | Up | 0.9811933613 |
| GSE28863_A2 | Up | 0.7890566330 |
| GSE28863_A3 | Up | 0.5334452733 |
| GSE28863_A4 | Down | -0.0019249610 |
| GSE48662 | Down | -0.2261681322 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-149-5p | MIMAT0000450 | MIRT045691 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
