HCSGD entry for TARBP1
1. General information
| Official gene symbol | TARBP1 |
|---|---|
| Entrez ID | 6894 |
| Gene full name | TAR (HIV-1) RNA binding protein 1 |
| Other gene symbols | TRM3 TRP-185 TRP185 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0008173 | RNA methyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9032235515 | 0.0375099806 | 0.9999902473 | 0.3653960770 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3291274216 |
| GSE13712_SHEAR | Down | -0.6469898638 |
| GSE13712_STATIC | Down | -0.2722761129 |
| GSE19018 | Down | -0.0985718707 |
| GSE19899_A1 | Up | 0.1335975263 |
| GSE19899_A2 | Down | -0.1665847097 |
| PubMed_21979375_A1 | Up | 0.3222851578 |
| PubMed_21979375_A2 | Down | -0.0583392275 |
| GSE35957 | Down | -0.2978791850 |
| GSE36640 | Down | -0.2004385463 |
| GSE54402 | Up | 0.1501286591 |
| GSE9593 | Down | -0.8196048224 |
| GSE43922 | Up | 0.0498883117 |
| GSE24585 | Down | -0.3968866366 |
| GSE37065 | Down | -0.1841196079 |
| GSE28863_A1 | Up | 0.1124702567 |
| GSE28863_A2 | Up | 0.8715149757 |
| GSE28863_A3 | Down | -0.4778403941 |
| GSE28863_A4 | Down | -0.1416213805 |
| GSE48662 | Down | -0.6673415768 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002569 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT002569 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
