HCSGD entry for SYPL1
1. General information
| Official gene symbol | SYPL1 |
|---|---|
| Entrez ID | 6856 |
| Gene full name | synaptophysin-like 1 |
| Other gene symbols | H-SP1 SYPL |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005215 | Transporter activity | IEA | molecular_function |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007268 | Synaptic transmission | TAS | biological_process |
| GO:0008021 | Synaptic vesicle | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA TAS | cellular_component |
| GO:0030141 | Secretory granule | IEA | cellular_component |
| GO:0030659 | Cytoplasmic vesicle membrane | IEA | cellular_component |
| GO:0042470 | Melanosome | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1043416398 | 0.8890598533 | 0.6713456256 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2444166208 |
| GSE13712_SHEAR | Down | -0.2601381224 |
| GSE13712_STATIC | Up | 0.0125723891 |
| GSE19018 | Up | 0.3368301738 |
| GSE19899_A1 | Up | 0.4192196825 |
| GSE19899_A2 | Up | 0.2616473949 |
| PubMed_21979375_A1 | Up | 0.8343824504 |
| PubMed_21979375_A2 | Up | 0.2164668911 |
| GSE35957 | Up | 0.0063448002 |
| GSE36640 | Up | 0.1354056017 |
| GSE54402 | Up | 0.2209584210 |
| GSE9593 | Up | 0.2848345276 |
| GSE43922 | Up | 0.3607325330 |
| GSE24585 | Up | 0.0171158260 |
| GSE37065 | Up | 0.0886358304 |
| GSE28863_A1 | Down | -0.1518341494 |
| GSE28863_A2 | Up | 0.3063553347 |
| GSE28863_A3 | Down | -0.2280155632 |
| GSE28863_A4 | Down | -0.2251236757 |
| GSE48662 | Down | -0.6158414223 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001497 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004119 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004119 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005203 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-340-5p | MIMAT0004692 | MIRT019598 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021479 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023449 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1 | MIMAT0000416 | MIRT023943 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT031347 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031908 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037563 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039715 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
