HCSGD entry for VAMP7

1. General information

Official gene symbolVAMP7
Entrez ID6845
Gene full namevesicle-associated membrane protein 7
Other gene symbolsSYBL1 TI-VAMP TIVAMP VAMP-7
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000046Autophagic vacuole fusionIMPbiological_process
GO:0000149SNARE bindingIBAmolecular_function
GO:0005484SNAP receptor activityIBAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIDAcellular_component
GO:0005765Lysosomal membraneIDA ISS TAScellular_component
GO:0005789Endoplasmic reticulum membraneISScellular_component
GO:0005794Golgi apparatusIDAcellular_component
GO:0005886Plasma membraneTAScellular_component
GO:0006810TransportIEAbiological_process
GO:0006887ExocytosisIBAbiological_process
GO:0006888ER to Golgi vesicle-mediated transportISSbiological_process
GO:0006892Post-Golgi vesicle-mediated transportTASbiological_process
GO:0006897EndocytosisIBAbiological_process
GO:0006906Vesicle fusionIDAbiological_process
GO:0006911Phagocytosis, engulfmentISSbiological_process
GO:0008333Endosome to lysosome transportIDAbiological_process
GO:0016020MembraneIEAcellular_component
GO:0016021Integral component of membraneIEAcellular_component
GO:0016192Vesicle-mediated transportIDAbiological_process
GO:0017156Calcium ion-dependent exocytosisISSbiological_process
GO:0019905Syntaxin bindingIEAmolecular_function
GO:0030054Cell junctionIEAcellular_component
GO:0030658Transport vesicle membraneIEAcellular_component
GO:0030670Phagocytic vesicle membraneIEAcellular_component
GO:0031201SNARE complexIBA ISScellular_component
GO:0031902Late endosome membraneISScellular_component
GO:0034197Triglyceride transportIEAbiological_process
GO:0043001Golgi to plasma membrane protein transportIEAbiological_process
GO:0043005Neuron projectionISScellular_component
GO:0043231Intracellular membrane-bounded organelleIDAcellular_component
GO:0043308Eosinophil degranulationISSbiological_process
GO:0043312Neutrophil degranulationISSbiological_process
GO:0045177Apical part of cellIEAcellular_component
GO:0045202SynapseIEAcellular_component
GO:0045335Phagocytic vesicleISScellular_component
GO:0048280Vesicle fusion with Golgi apparatusIEAbiological_process
GO:0048471Perinuclear region of cytoplasmIEAcellular_component
GO:1900483Regulation of protein targeting to vacuolar membraneIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.44357542650.65485960640.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3234651415
GSE13712_SHEARDown-0.4296177143
GSE13712_STATICDown-0.1723231605
GSE19018Up0.0099938174
GSE19899_A1Down-0.1277393319
GSE19899_A2Up0.0531497578
PubMed_21979375_A1Down-0.3854863708
PubMed_21979375_A2Up0.0941301621
GSE35957Up0.3717419464
GSE36640Up0.6798846653
GSE54402Down-0.0821465562
GSE9593Up0.2108176857
GSE43922Up0.0010388695
GSE24585Up0.2585327643
GSE37065Down-0.0385715023
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Down-0.4303941007

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-1MIMAT0000416MIRT024077ProteomicsFunctional MTI (Weak)18668040
hsa-miR-26b-5pMIMAT0000083MIRT030255MicroarrayFunctional MTI (Weak)19088304
hsa-miR-93-5pMIMAT0000093MIRT048872CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.