HCSGD entry for SURF6
1. General information
| Official gene symbol | SURF6 |
|---|---|
| Entrez ID | 6838 |
| Gene full name | surfeit 6 |
| Other gene symbols | RRP14 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001652 | Granular component | ISS | cellular_component |
| GO:0003677 | DNA binding | ISS | molecular_function |
| GO:0003723 | RNA binding | ISS | molecular_function |
| GO:0005654 | Nucleoplasm | IEA | cellular_component |
| GO:0005730 | Nucleolus | TAS | cellular_component |
| GO:0042254 | Ribosome biogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0680057255 | 0.7952530451 | 0.5605946445 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4179753340 |
| GSE13712_SHEAR | Up | 0.1034642362 |
| GSE13712_STATIC | Down | -0.0994440465 |
| GSE19018 | Down | -0.0883502004 |
| GSE19899_A1 | Up | 0.2517074096 |
| GSE19899_A2 | Up | 1.3456905086 |
| PubMed_21979375_A1 | Up | 1.0479995888 |
| PubMed_21979375_A2 | Up | 0.4780155498 |
| GSE35957 | Down | -0.1154145166 |
| GSE36640 | Up | 0.0321661895 |
| GSE54402 | Up | 0.2495803190 |
| GSE9593 | Down | -0.2041287968 |
| GSE43922 | Up | 0.4979099370 |
| GSE24585 | Down | -0.5062407901 |
| GSE37065 | Down | -0.1185983465 |
| GSE28863_A1 | Up | 0.0936118732 |
| GSE28863_A2 | Down | -0.0189358493 |
| GSE28863_A3 | Up | 0.0774318606 |
| GSE28863_A4 | Down | -0.0263881988 |
| GSE48662 | Down | -0.1782525120 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040736 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10b-5p | MIMAT0000254 | MIRT047474 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049761 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
