HCSGD entry for SS18
1. General information
| Official gene symbol | SS18 |
|---|---|
| Entrez ID | 6760 |
| Gene full name | synovial sarcoma translocation, chromosome 18 |
| Other gene symbols | SSXT SYT |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000226 | Microtubule cytoskeleton organization | IEA | biological_process |
| GO:0000902 | Cell morphogenesis | IEA | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005881 | Cytoplasmic microtubule | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0030374 | Ligand-dependent nuclear receptor transcription coactivator activity | IDA | molecular_function |
| GO:0042493 | Response to drug | IEA | biological_process |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IDA | biological_process |
| GO:0048013 | Ephrin receptor signaling pathway | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1180367729 | 0.8722615858 | 0.7048198503 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1227177106 |
| GSE13712_SHEAR | Up | 0.4207750082 |
| GSE13712_STATIC | Up | 0.2639068308 |
| GSE19018 | Down | -0.6584667114 |
| GSE19899_A1 | Up | 0.4209944081 |
| GSE19899_A2 | Up | 0.4404950911 |
| PubMed_21979375_A1 | Up | 0.5467359881 |
| PubMed_21979375_A2 | Up | 0.1895557879 |
| GSE35957 | Up | 0.0790569222 |
| GSE36640 | Down | -0.0692545983 |
| GSE54402 | Up | 0.2840832763 |
| GSE9593 | Up | 0.1585717052 |
| GSE43922 | Up | 0.0514080260 |
| GSE24585 | Up | 0.0481824981 |
| GSE37065 | Down | -0.0546249952 |
| GSE28863_A1 | Up | 0.1635680105 |
| GSE28863_A2 | Up | 0.1199769779 |
| GSE28863_A3 | Down | -0.2488312118 |
| GSE28863_A4 | Up | 0.0978268824 |
| GSE48662 | Down | -0.3665642000 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-140-3p | MIMAT0004597 | MIRT021673 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024343 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026660 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043346 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046813 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
