HCSGD entry for SNTB2
1. General information
| Official gene symbol | SNTB2 |
|---|---|
| Entrez ID | 6645 |
| Gene full name | syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) |
| Other gene symbols | D16S2531E EST25263 SNT2B2 SNT3 SNTL |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005516 | Calmodulin binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0016010 | Dystrophin-associated glycoprotein complex | TAS | cellular_component |
| GO:0016020 | Membrane | TAS | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030658 | Transport vesicle membrane | IEA | cellular_component |
| GO:0043234 | Protein complex | IDA | cellular_component |
| GO:0045202 | Synapse | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8210661373 | 0.0467374264 | 0.9999902473 | 0.4057308047 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1867324247 |
| GSE13712_SHEAR | Down | -0.1813940388 |
| GSE13712_STATIC | Up | 0.0638166407 |
| GSE19018 | Down | -0.2493405429 |
| GSE19899_A1 | Down | -0.3504506048 |
| GSE19899_A2 | Down | -0.2915242613 |
| PubMed_21979375_A1 | Down | -0.8384754488 |
| PubMed_21979375_A2 | Down | -0.5539579408 |
| GSE35957 | Down | -0.1064131239 |
| GSE36640 | Down | -0.1677759285 |
| GSE54402 | Down | -0.0529062972 |
| GSE9593 | Up | 0.0696833950 |
| GSE43922 | Down | -0.5338564591 |
| GSE24585 | Down | -0.0350797466 |
| GSE37065 | Down | -0.3546616885 |
| GSE28863_A1 | Up | 1.1473058322 |
| GSE28863_A2 | Up | 0.4012106928 |
| GSE28863_A3 | Down | -0.5852225128 |
| GSE28863_A4 | Up | 0.1298939942 |
| GSE48662 | Up | 0.1552566678 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020905 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023438 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT047392 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047587 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050332 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
