HCSGD entry for SNTB1
1. General information
| Official gene symbol | SNTB1 |
|---|---|
| Entrez ID | 6641 |
| Gene full name | syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) |
| Other gene symbols | 59-DAP A1B BSYN2 DAPA1B SNT2 SNT2B1 TIP-43 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005516 | Calmodulin binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0006936 | Muscle contraction | TAS | biological_process |
| GO:0016010 | Dystrophin-associated glycoprotein complex | TAS | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030165 | PDZ domain binding | IEA | molecular_function |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
| GO:0043234 | Protein complex | IDA | cellular_component |
| GO:0045202 | Synapse | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8775615364 | 0.1050135899 | 0.9999902473 | 0.6211604494 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0980125412 |
| GSE13712_SHEAR | Down | -0.0308779583 |
| GSE13712_STATIC | Up | 0.2045032175 |
| GSE19018 | Up | 0.2707433849 |
| GSE19899_A1 | Down | -0.0457696043 |
| GSE19899_A2 | Up | 0.1522881495 |
| PubMed_21979375_A1 | Down | -0.1544669631 |
| PubMed_21979375_A2 | Up | 0.1356505261 |
| GSE35957 | Down | -0.5426346909 |
| GSE36640 | Down | -0.5413230397 |
| GSE54402 | Down | -0.4794916714 |
| GSE9593 | Up | 0.3978437686 |
| GSE43922 | Down | -0.0325453522 |
| GSE24585 | Down | -0.6687326783 |
| GSE37065 | Down | -0.2026589229 |
| GSE28863_A1 | Up | 0.1761066514 |
| GSE28863_A2 | Down | -0.0651644745 |
| GSE28863_A3 | Up | 0.2002966807 |
| GSE28863_A4 | Down | -0.1492996557 |
| GSE48662 | Down | -0.1913572045 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017689 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030537 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
