HCSGD entry for SNRPN
1. General information
| Official gene symbol | SNRPN |
|---|---|
| Entrez ID | 6638 |
| Gene full name | small nuclear ribonucleoprotein polypeptide N |
| Other gene symbols | HCERN3 PWCR RT-LI SM-D SMN SNRNP-N SNURF-SNRPN sm-N |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005681 | Spliceosomal complex | TAS | cellular_component |
| GO:0005685 | U1 snRNP | IEA | cellular_component |
| GO:0005686 | U2 snRNP | IEA | cellular_component |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0009725 | Response to hormone | IEA | biological_process |
| GO:0019013 | Viral nucleocapsid | IEA | cellular_component |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
| GO:0030532 | Small nuclear ribonucleoprotein complex | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0477018730 | 0.8635650317 | 0.4823515175 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1694919925 |
| GSE13712_SHEAR | Down | -0.1260286358 |
| GSE13712_STATIC | Up | 0.1378163341 |
| GSE19018 | Up | 0.0440522830 |
| GSE19899_A1 | Up | 0.1433896957 |
| GSE19899_A2 | Up | 0.0457894884 |
| PubMed_21979375_A1 | Down | -0.6022217463 |
| PubMed_21979375_A2 | Down | -0.0581093322 |
| GSE35957 | Up | 0.3922192370 |
| GSE36640 | Down | -0.2847529363 |
| GSE54402 | Down | -0.0557344369 |
| GSE9593 | Up | 0.0701282470 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 1.1446151270 |
| GSE28863_A2 | Up | 0.0589140416 |
| GSE28863_A3 | Up | 0.4497321990 |
| GSE28863_A4 | Up | 0.5439918688 |
| GSE48662 | Up | 0.1761582091 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029257 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
