HCSGD entry for SNRPF
1. General information
| Official gene symbol | SNRPF |
|---|---|
| Entrez ID | 6636 |
| Gene full name | small nuclear ribonucleoprotein polypeptide F |
| Other gene symbols | SMF Sm-F snRNP-F |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000387 | Spliceosomal snRNP assembly | IDA TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003723 | RNA binding | IMP | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005683 | U7 snRNP | IDA | cellular_component |
| GO:0005685 | U1 snRNP | IDA | cellular_component |
| GO:0005687 | U4 snRNP | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0005829 | Cytosol | IDA TAS | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006369 | Termination of RNA polymerase II transcription | TAS | biological_process |
| GO:0008334 | Histone mRNA metabolic process | TAS | biological_process |
| GO:0008380 | RNA splicing | IMP TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0030532 | Small nuclear ribonucleoprotein complex | IDA | cellular_component |
| GO:0031124 | MRNA 3'-end processing | TAS | biological_process |
| GO:0034660 | NcRNA metabolic process | TAS | biological_process |
| GO:0034709 | Methylosome | IDA | cellular_component |
| GO:0034715 | PICln-Sm protein complex | IDA | cellular_component |
| GO:0034719 | SMN-Sm protein complex | IDA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9711858098 | 0.0072625280 | 0.9999902473 | 0.1700685053 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1576169795 |
| GSE13712_SHEAR | Down | -0.1181545370 |
| GSE13712_STATIC | Up | 0.0947816904 |
| GSE19018 | Down | -0.5082245565 |
| GSE19899_A1 | Down | -0.9575111952 |
| GSE19899_A2 | Down | -0.4609022691 |
| PubMed_21979375_A1 | Down | -0.9646461591 |
| PubMed_21979375_A2 | Down | -0.6396823935 |
| GSE35957 | Down | -0.8080995957 |
| GSE36640 | Down | -1.4065288638 |
| GSE54402 | Up | 0.3200755376 |
| GSE9593 | Down | -0.5683353874 |
| GSE43922 | Down | -0.0013580894 |
| GSE24585 | Down | -0.5983677980 |
| GSE37065 | Down | -0.1545545212 |
| GSE28863_A1 | Down | -0.2254429997 |
| GSE28863_A2 | Up | 0.0179249487 |
| GSE28863_A3 | Up | 0.0537701046 |
| GSE28863_A4 | Up | 0.0095601231 |
| GSE48662 | Down | -0.5070794337 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022590 | Proteomics;Microarray | Non-Functional MTI (Weak) | 18668037 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036917 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
