HCSGD entry for SNRPD1
1. General information
| Official gene symbol | SNRPD1 |
|---|---|
| Entrez ID | 6632 |
| Gene full name | small nuclear ribonucleoprotein D1 polypeptide 16kDa |
| Other gene symbols | HsT2456 SMD1 SNRPD Sm-D1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | TAS | biological_process |
| GO:0000387 | Spliceosomal snRNP assembly | IDA TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA TAS | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005685 | U1 snRNP | IDA | cellular_component |
| GO:0005687 | U4 snRNP | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005829 | Cytosol | IDA TAS | cellular_component |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0030532 | Small nuclear ribonucleoprotein complex | TAS | cellular_component |
| GO:0034660 | NcRNA metabolic process | TAS | biological_process |
| GO:0034709 | Methylosome | IDA | cellular_component |
| GO:0034715 | PICln-Sm protein complex | IDA | cellular_component |
| GO:0034719 | SMN-Sm protein complex | IDA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9746657840 | 0.0048486304 | 0.9999902473 | 0.1418008889 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1313071225 |
| GSE13712_SHEAR | Down | -0.1878957920 |
| GSE13712_STATIC | Down | -0.1225065461 |
| GSE19018 | Down | -1.4974025040 |
| GSE19899_A1 | Down | -0.3938466080 |
| GSE19899_A2 | Down | -0.7374106314 |
| PubMed_21979375_A1 | Up | 0.0432728196 |
| PubMed_21979375_A2 | Down | -0.4326939876 |
| GSE35957 | Down | -0.6039385400 |
| GSE36640 | Down | -1.2863782471 |
| GSE54402 | Up | 0.2510423205 |
| GSE9593 | Down | -0.5685864489 |
| GSE43922 | Up | 0.0304463788 |
| GSE24585 | Down | -0.9608897488 |
| GSE37065 | Down | -0.1281040719 |
| GSE28863_A1 | Down | -0.1694994387 |
| GSE28863_A2 | Down | -0.1843750467 |
| GSE28863_A3 | Down | -0.0402538685 |
| GSE28863_A4 | Up | 0.3327895205 |
| GSE48662 | Down | -0.4456492991 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019490 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024897 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026601 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029768 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040444 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT048162 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
