HCSGD entry for SNRPC
1. General information
| Official gene symbol | SNRPC |
|---|---|
| Entrez ID | 6631 |
| Gene full name | small nuclear ribonucleoprotein polypeptide C |
| Other gene symbols | U1C Yhc1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000243 | Commitment complex | IEA | cellular_component |
| GO:0000387 | Spliceosomal snRNP assembly | IDA IEA | biological_process |
| GO:0000395 | MRNA 5'-splice site recognition | IEA | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IDA | biological_process |
| GO:0003727 | Single-stranded RNA binding | IDA | molecular_function |
| GO:0003729 | MRNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005685 | U1 snRNP | IDA IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IDA | molecular_function |
| GO:0015030 | Cajal body | IDA | cellular_component |
| GO:0030619 | U1 snRNA binding | IDA | molecular_function |
| GO:0042803 | Protein homodimerization activity | IPI | molecular_function |
| GO:0071004 | U2-type prespliceosome | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9153356445 | 0.0604270886 | 0.9999902473 | 0.4629984021 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3495270313 |
| GSE13712_SHEAR | Down | -0.0530428985 |
| GSE13712_STATIC | Up | 0.0236725721 |
| GSE19018 | Down | -0.2349917331 |
| GSE19899_A1 | Down | -0.1842347291 |
| GSE19899_A2 | Down | -0.1682356381 |
| PubMed_21979375_A1 | Up | 0.3462552269 |
| PubMed_21979375_A2 | Down | -0.3141957448 |
| GSE35957 | Down | -0.7301801001 |
| GSE36640 | Down | -0.5861585528 |
| GSE54402 | Up | 0.1219238407 |
| GSE9593 | Down | -0.3230708212 |
| GSE43922 | Up | 0.0459687874 |
| GSE24585 | Down | -0.4978018993 |
| GSE37065 | Down | -0.1526218469 |
| GSE28863_A1 | Down | -0.1417620688 |
| GSE28863_A2 | Up | 0.1772647505 |
| GSE28863_A3 | Down | -0.3144660642 |
| GSE28863_A4 | Up | 0.0126811757 |
| GSE48662 | Down | -0.2815995356 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-23b-3p | MIMAT0000418 | MIRT023480 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027399 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028793 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031425 | Microarray | Functional MTI (Weak) | 21199864 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT037015 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-296-3p | MIMAT0004679 | MIRT038366 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7f-5p | MIMAT0000067 | MIRT051360 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052477 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
