HCSGD entry for SNRPB2
1. General information
| Official gene symbol | SNRPB2 |
|---|---|
| Entrez ID | 6629 |
| Gene full name | small nuclear ribonucleoprotein polypeptide B |
| Other gene symbols | Msl1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005686 | U2 snRNP | TAS | cellular_component |
| GO:0006397 | MRNA processing | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0017069 | SnRNA binding | IEA | molecular_function |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9625471069 | 0.1212390753 | 0.9999902473 | 0.6693614094 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0323701705 |
| GSE13712_SHEAR | Down | -0.1113235789 |
| GSE13712_STATIC | Up | 0.0249434870 |
| GSE19018 | Down | -0.2534172221 |
| GSE19899_A1 | Down | -0.0577964000 |
| GSE19899_A2 | Down | -0.1666657974 |
| PubMed_21979375_A1 | Up | 0.0519241225 |
| PubMed_21979375_A2 | Up | 0.0169047590 |
| GSE35957 | Down | -0.4256700137 |
| GSE36640 | Down | -0.4064179265 |
| GSE54402 | Up | 0.1930898833 |
| GSE9593 | Down | -0.3901176747 |
| GSE43922 | Down | -0.0201644765 |
| GSE24585 | Down | -0.4258534354 |
| GSE37065 | Up | 0.0050663468 |
| GSE28863_A1 | Up | 0.2683071360 |
| GSE28863_A2 | Down | -0.0395555471 |
| GSE28863_A3 | Down | -0.0725251014 |
| GSE28863_A4 | Down | -0.0175116086 |
| GSE48662 | Down | -0.5040345452 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-24-3p | MIMAT0000080 | MIRT030365 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031432 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-193a-3p | MIMAT0000459 | MIRT044882 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
