HCSGD entry for SNAPC4

1. General information

Official gene symbolSNAPC4
Entrez ID6621
Gene full namesmall nuclear RNA activating complex, polypeptide 4, 190kDa
Other gene symbolsPTFalpha SNAP190
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003677DNA bindingIDAmolecular_function
GO:0003682Chromatin bindingIEAmolecular_function
GO:0003700Sequence-specific DNA binding transcription factor activityTASmolecular_function
GO:0005634NucleusICcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0006366Transcription from RNA polymerase II promoterTASbiological_process
GO:0006383Transcription from RNA polymerase III promoterTASbiological_process
GO:0009301SnRNA transcriptionTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0019185SnRNA-activating protein complexIDAcellular_component
GO:0042795SnRNA transcription from RNA polymerase II promoterIDAbiological_process
GO:0042796SnRNA transcription from RNA polymerase III promoterIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.09936401350.89544439800.65795225161.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1607021971
GSE13712_SHEARDown-0.2084596778
GSE13712_STATICDown-0.0289798782
GSE19018Down-0.0426722689
GSE19899_A1Up0.1922422833
GSE19899_A2Up0.9036284491
PubMed_21979375_A1Up0.7203217409
PubMed_21979375_A2Up0.8669045651
GSE35957Up0.0750848286
GSE36640Up0.0809101388
GSE54402Up0.1750503058
GSE9593Up0.0226684867
GSE43922Up0.1667629048
GSE24585Down-0.6142212459
GSE37065Down-0.1279754618
GSE28863_A1Down-0.0263560056
GSE28863_A2Up0.1015956291
GSE28863_A3Up0.2763116388
GSE28863_A4Up0.0376320206
GSE48662Up0.1568785326

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-744-5pMIMAT0004945MIRT037706CLASHFunctional MTI (Weak)23622248
hsa-miR-30c-5pMIMAT0000244MIRT048015CLASHFunctional MTI (Weak)23622248
hsa-miR-17-3pMIMAT0000071MIRT050783CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.