HCSGD entry for SNAPC1
1. General information
| Official gene symbol | SNAPC1 |
|---|---|
| Entrez ID | 6617 |
| Gene full name | small nuclear RNA activating complex, polypeptide 1, 43kDa |
| Other gene symbols | PTFgamma SNAP43 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006383 | Transcription from RNA polymerase III promoter | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0095104707 | 0.9350710535 | 0.2493277888 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3284119410 |
| GSE13712_SHEAR | Up | 0.4703013109 |
| GSE13712_STATIC | Up | 1.1038898217 |
| GSE19018 | Up | 0.5151003680 |
| GSE19899_A1 | Up | 0.5049138351 |
| GSE19899_A2 | Up | 0.6282316730 |
| PubMed_21979375_A1 | Up | 1.1516260053 |
| PubMed_21979375_A2 | Up | 0.3191020361 |
| GSE35957 | Down | -0.6220356776 |
| GSE36640 | Up | 0.6815237425 |
| GSE54402 | Up | 0.0815060484 |
| GSE9593 | Down | -0.2516756008 |
| GSE43922 | Up | 0.4608837896 |
| GSE24585 | Up | 0.5021336673 |
| GSE37065 | Down | -0.0684983849 |
| GSE28863_A1 | Down | -0.2533146855 |
| GSE28863_A2 | Up | 0.2039056660 |
| GSE28863_A3 | Down | -0.0926794801 |
| GSE28863_A4 | Up | 0.1265803905 |
| GSE48662 | Up | 0.2555318177 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019697 | Microarray | Functional MTI (Weak) | 20215506 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
